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1

Intracellular cavity of sensor domain controls allosteric gating of TRPA1 channel

Zimova, Lucie, Sinica, Viktor, Kadkova, Anna, Vyklicka, Lenka, Zima, Vlastimil, Barvik, Ivan, Vlachova, Viktorie

Journal:

Science Signaling

Year:

2018

Language:

english

File:

PDF, 8.68 MB

english, 2018

2

Effect of trapping on transport coherence. II. Continuous-time random-walk treatment

Heřman, Pavel, Barvík, Ivan

Journal:

Physical Review B

Year:

1993

Language:

english

File:

PDF, 472 KB

english, 1993

3

Nonlinearity and trapping in excitation transfer: Dimers and trimers

Barvík, Ivan, Esser, Bernd, Schanz, Holger

Journal:

Physical Review B

Year:

1995

Language:

english

File:

PDF, 462 KB

english, 1995

4

CapZyme-Seq Comprehensively Defines Promoter-Sequence Determinants for RNA 5′ Capping with NAD +

Vvedenskaya, Irina O., Bird, Jeremy G., Zhang, Yuanchao, Zhang, Yu, Jiao, Xinfu, Barvík, Ivan, Krásný, Libor, Kiledjian, Megerditch, Taylor, Deanne M., Ebright, Richard H., Nickels, Bryce E.

Journal:

Year:

2018

Language:

english

File:

PDF, 3.84 MB

english, 2018

5

Coherence effects in ring molecular systems

Pavel Heřman, Ivan Barvík

Journal:

physica status solidi (c)

Year:

2006

Language:

english

File:

PDF, 274 KB

english, 2006

6

Structural modeling and patch-clamp analysis of pain-related mutation TRPA1-N855S reveal inter-subunit salt bridges stabilizing the channel open state

Zíma, Vlastimil, Witschas, Katja, Hynkova, Anna, Zímová, Lucie, Barvík, Ivan, Vlachova, Viktorie

Journal:

Neuropharmacology

Year:

2015

Language:

english

File:

PDF, 3.93 MB

english, 2015

7

Phosphoramidate Dinucleosides as Hepatitis C Virus Polymerase Inhibitors

Zlatev, Ivan, Dutartre, Hélène, Barvik, Ivan, Neyts, Johan, Canard, Bruno, Vasseur, Jean-Jacques, Alvarez, Karine, Morvan, François

Journal:

Journal of Medicinal Chemistry

Year:

2008

Language:

english

File:

PDF, 916 KB

english, 2008

8

FEMTOSECOND DYNAMICS IN THE ANISOTROPY OF EMISSION IN LH2 UNITS

BARVÍK, IVAN, KONDOV, IVAN, HEŘMAN, PAVEL, SCHREIBER, MICHAEL, KLEINEKATHÖFER, ULRICH

Journal:

Nonlinear Optics

Year:

2002

Language:

english

File:

PDF, 271 KB

english, 2002

9

Mapping of CaM, S100A1 and PIP2-Binding Epitopes in the Intracellular N- and C-Termini of TRPM4

Bousova, Kristyna, Barvik, Ivan, Herman, Petr, HofbauerovÃ¡, KateÅina, Monincova, Lenka, Majer, Pavel, Zouharova, Monika, Vetyskova, Veronika, Postulkova, Klara, Vondrasek, Jiri

Journal:

International Journal of Molecular Sciences

Year:

2020

File:

PDF, 2.75 MB

2020

10

Conformational evaluation of labeled C3′-O-P-13CH2-O-C4″ phosphonate internucleotide linkage, a phosphodiester isostere

Zdeněk Točík, Miloš Buděšínský, Ivan Barvík Jr, Ivan Rosenberg

Journal:

Year:

2009

Language:

english

File:

PDF, 1.13 MB

english, 2009

11

Time-resolved study of energy transport in semi-infinite chain with one sink: Coherent versus incoherent description of trapping process

Petr Chvosta, Ivan Barvík

Journal:

Zeitschrift für Physik B Condensed Matter

Year:

1991

Language:

english

File:

PDF, 942 KB

english, 1991

12

Correction to 3′-Deoxy Phosphoramidate Dinucleosides as Improved Inhibitors of Hepatitis C Virus Subgenomic Replicon and NS5B Polymerase Activity

Priet, Stephane, Zlatev, Ivan, Barvik, Ivan, Geerts, Katrien, Leyssen, Pieter, Neyts, Johan, Dutartre, Helene, Canard, Bruno, Vasseur, Jean-Jacques, Morvan, François, Alvarez, Karine

Journal:

Journal of Medicinal Chemistry

Year:

2011

Language:

english

File:

PDF, 614 KB

english, 2011

13

Non-canonical transcription initiation: the expanding universe of transcription initiating substrates

Barvík, Ivan, Rejman, Dominik, Panova, Natalya, Šanderová, Hana, Krásný, Libor, Narberhaus, Franz

Journal:

FEMS Microbiology Reviews

Year:

2016

Language:

english

File:

PDF, 801 KB

english, 2016

14

Transfer and decay of an exciton coupled to vibrations in a dimer

Schanz, Holger, Barvík, Ivan, Esser, Bernd

Journal:

Physical Review B

Year:

1997

Language:

english

File:

PDF, 279 KB

english, 1997

15

The impact of C677T and A1298C MTHFR polymorphisms on methotrexate therapeutic response in East Bohemian region rheumatoid arthritis patients

Soukup, Tomas, Dosedel, Martin, Pavek, Petr, Nekvindova, Jana, Barvik, Ivan, Bubancova, Iva, Bradna, Petr, Kubena, Ales Antonin, Carazo, Alejandro Fernández, Veleta, Tomas, Vlcek, Jiri

Journal:

Rheumatology International

Year:

2015

Language:

english

File:

PDF, 392 KB

english, 2015

16

Synthesis and structural characterization of monomeric and dimeric Peptide Nucleic Acid prepared by microwave-promoted multicomponent reaction

Ovadia, Reuben, Lebrun, Aurélien, Barvik, Ivan, Vasseur, Jean-Jacques, Baraguey, Carine, Alvarez, K

Journal:

Organic & Biomolecular Chemistry

Year:

2015

Language:

english

File:

PDF, 1.49 MB

english, 2015

17

The torpedo effect in Bacillus subtilis : RN ase J1 resolves stalled transcription complexes

Šiková, Michaela, Wiedermannová, Jana, Převorovský, Martin, Barvík, Ivan, Sudzinová, Petra, Kofroňová, Olga, Benada, Oldřich, Šanderová, Hana, Condon, Ciarán, Krásný, Libor

Journal:

The EMBO Journal

Year:

2019

File:

PDF, 1.97 MB

2019

18

[IEEE 2009 International Conference on Computational Science and Engineering - Vancouver, BC, Canada (2009.08.29-2009.08.31)] 2009 International Conference on Computational Science and Engineering - Computer Simulation of the Anisotropy of Fluorescence in Ring Molecular Systems: Influence of Disorder and Ellipticity

Herman, Pavel, Zapletal, David, Barvik, Ivan

Year:

2009

Language:

english

File:

PDF, 16.00 MB

english, 2009

19

Human and Mouse TRPA1 Are Heat and Cold Sensors Differentially Tuned by Voltage

Sinica, Viktor, Zimova, Lucie, Barvikova, Kristyna, Macikova, Lucie, Barvik, Ivan, Vlachova, Viktorie

Journal:

Year:

2019

File:

PDF, 3.19 MB

2019

20

The anisotropy of fluorescence in ring units

Michal Reiter, Pavel Heřman, Ivan Barvík

Journal:

Journal of Luminescence

Year:

2004

Language:

english

File:

PDF, 393 KB

english, 2004

21

Description of excitation transfer and damping in the primary processes of bio-(chemical) systems

Vojtech Szöcs, Ivan Barvík

Journal:

Journal of Theoretical Biology

Year:

1986

Language:

english

File:

PDF, 257 KB

english, 1986

22

Complex between Human RNase HI and the phosphonate-DNA/RNA duplex: Molecular dynamics study

Maláč, Kamil, Barvík, Ivan

Journal:

Journal of Molecular Graphics and Modelling

Year:

2013

Language:

english

File:

PDF, 2.02 MB

english, 2013

23

Computer Simulation of the Exciton Transfer in the Coupled Ring Antenna Subunits of Bacteria Photosynthetic Systems

Heřman, Pavel, Barvík, Ivan

Journal:

Journal of Physical Chemistry B

Year:

1999

Language:

english

File:

PDF, 712 KB

english, 1999

24

Influence of major-groove chemical modifications of DNA on transcription by bacterial RNA polymerases

Raindlová, Veronika, Janoušková, Martina, Slavíčková, Michaela, Perlíková, Pavla, Boháčová, Soňa, Milisavljevič, Nemanja, Šanderová, Hana, Benda, Martin, Barvík, Ivan, Krásný, Libor, Hocek, Michal

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 8.62 MB

english, 2016

25

The N-terminal region is crucial for the thermostability of the G-domain of Bacillus stearothermophilus EF-Tu

Hana Šanderová, Hana Tišerová, Ivan Barvík, Luděk Sojka, Jiří Jonák, Libor Krásný

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2010

Language:

english

File:

PDF, 1.04 MB

english, 2010

26

Ring Enlargement of Cyclic Acetals and Ketals: A Way to Seven-Membered Nucleoside Phostones

Páv, Ondřej, Barvík, Ivan, Buděšínský, Miloš, Masojídková, Milena, Rosenberg, Ivan

Journal:

Organic Letters

Year:

2007

Language:

english

File:

PDF, 108 KB

english, 2007

27

The plausible association of MTHFR and ADORA2A polymorphisms with nodules in rheumatoid arthritis patients treated with methotrexate

Soukup, Tomas, Dosedel, Martin, Nekvindova, Jana, Antonin Kubena, Ales, Tacheci, Ilja, Duintjer Tebbens, Jurjen, Vlcek, Jiri, Bradna, Petr, Barvik, Ivan, Pavek, Petr

Journal:

Pharmacogenetics and Genomics

Year:

2017

Language:

english

File:

PDF, 150 KB

english, 2017

28

Phospho-Mimetic Mutation at Ser602 Inactivates Human TRPA1 Channel

Barvikova, Kristyna, Barvik, Ivan, Sinica, Viktor, Zimova, Lucie, Vlachova, Viktorie

Journal:

International Journal of Molecular Sciences

Year:

2020

File:

PDF, 5.92 MB

2020

29

Temperature modulates binding specificity and affinity of the d-trehalose/d-maltose-binding protein from the hyperthermophilic archaeon Thermococcus litoralis

Petr Herman, Ivan Barvik Jr., Maria Staiano, Annalisa Vitale, Jaroslav Vecer, Mose' Rossi, Sabato D'Auria

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2007

Language:

english

File:

PDF, 520 KB

english, 2007

30

Coherence effects in the exciton transfer in LH2 unit

Pavel Heřman, Ivan Barvík

Journal:

Czechoslovak Journal of Physics

Year:

1998

Language:

english

File:

PDF, 438 KB

english, 1998

31

Exciton transfer near donors and acceptors

Vojtech Szöcs, Ivan Barvik, Vladislav Cápek

Journal:

Polymer Bulletin

Year:

1982

Language:

english

File:

PDF, 227 KB

english, 1982

32

AIP Conference Proceedings [AIP XXII INTERNATIONAL CONFERENCE ON RAMAN SPECTROSCOPY - Boston (MA) (8–10 August 2010)] - Spectroscopic Study of Magnesium Effect on Stability of RNA and DNA Triple Strand Polynucleotide

Herrera, Shirly Josefina Espinoza, Barvik, Ivan, Stepanek, Josef, Champion, P. M., Ziegler, L. D.

Year:

2010

Language:

english

File:

PDF, 244 KB

english, 2010

33

SPIE Proceedings [SPIE Prague -- 2004 DL over - Prague, Czech Republic (Monday 30 August 2004)] XV International Symposium on Gas Flow, Chemical Lasers, and High-Power Lasers - Decoherence vs. Coulombic interaction in quantum systems with exciton transfer

Pojsl, Miloslav, Herman, Pavel, Barvik, Ivan, Petrek, Martin

Year:

2004

Language:

english

File:

PDF, 442 KB

english, 2004

34

Interplay of Exciton Transfer and Relaxation

Barvík, Ivan, Macek, Jan

Journal:

Journal of the Chinese Chemical Society

Year:

2000

Language:

english

File:

PDF, 677 KB

english, 2000

35

The First Extracellular Linker Is Important for Several Aspects of the Gating Mechanism of Human TRPA1 Channel

Marsakova, Lenka, Barvik, Ivan, Zima, Vlastimil, Zimova, Lucie, Vlachova, Viktorie

Journal:

Frontiers in Molecular Neuroscience

Year:

2017

Language:

english

File:

PDF, 7.23 MB

english, 2017

36

Impact of the Guanidinium Group on Hybridization and Cellular Uptake of Cationic Oligonucleotides

Gaëlle Deglane, Saïd Abes, Thibaut Michel, Paul Prévot, Eric Vives, Françoise Debart, Ivan Barvik, Bernard Lebleu, Jean-Jacques Vasseur

Journal:

Year:

2006

Language:

english

File:

PDF, 762 KB

english, 2006

37

Memory Effects in the Fluorescence Depolarization Dynamics Studied within the B850 Ring of Purple Bacteria

Kleinekathöfer, Ulrich, Barvík, Ivan, Heřman, Pavel, Kondov, Ivan, Schreiber, Michael

Journal:

Journal of Physical Chemistry B

Year:

2003

Language:

english

File:

PDF, 133 KB

english, 2003

38

The mechanism of RNA 5′ capping with NAD+, NADH and desphospho-CoA

Bird, Jeremy G., Zhang, Yu, Tian, Yuan, Panova, Natalya, Barvík, Ivan, Greene, Landon, Liu, Min, Buckley, Brian, Krásný, Libor, Lee, Jeehiun K., Kaplan, Craig D., Ebright, Richard H., Nickels, Bryce E

Journal:

Year:

2016

Language:

english

File:

PDF, 8.13 MB

english, 2016

39

RNA-directed off/on switch of RNase H activity using boronic ester formation

Smietana, Mike, Vasseur, Jean-Jacques, Reverte, Maëva, Barvik, Ivan

Journal:

Organic & Biomolecular Chemistry

Year:

2017

Language:

english

File:

PDF, 1.34 MB

english, 2017

40

ENERGY RELAXATION AND TRANSFER IN TRIMER

HEŠMAN, PAVEL, BARVÍK, IVAN

Journal:

International Journal of Modern Physics B

Year:

2001

Language:

english

File:

PDF, 388 KB

english, 2001

41

3′-Deoxy Phosphoramidate Dinucleosides as Improved Inhibitors of Hepatitis C Virus Subgenomic Replicon and NS5B Polymerase Activity

Priet, Stephane, Zlatev, Ivan, Barvik, Ivan, Geerts, Katrien, Leyssen, Pieter, Neyts, Johan, Dutartre, Helene, Canard, Bruno, Vasseur, Jean-Jacques, Morvan, François, Alvarez, Karine

Journal:

Journal of Medicinal Chemistry

Year:

2010

Language:

english

File:

PDF, 2.31 MB

english, 2010

42

Tuning the hybridization properties of modified oligonucleotides: from flexible to conformationally constrained phosphonate internucleotide linkages

Páv, Ondřej, Barvík, Ivan, Liboska, Radek, Petrová, Magdalena, Šimák, Ondřej, Rosenbergová, Šárka, Novák, Pavel, Buděšínský, Miloš, Rosenberg, Ivan

Journal:

Organic & Biomolecular Chemistry

Year:

2017

Language:

english

File:

PDF, 1.25 MB

english, 2017

43

FEMTOSECOND DYNAMICS IN THE ANISOTROPY OF EMISSION IN LH2 UNITS

BARVÍK, IVAN, KONDOV, IVAN, HEŘMAN, PAVEL, SCHREIBER, MICHAEL, KLEINEKATHÖFER, ULRICH

Journal:

Nonlinear Optics

Year:

2002

Language:

english

File:

PDF, 248 KB

english, 2002

44

Dynamic and Programmable DNA-Templated Boronic Ester Formation

Anthony R. Martin, Dr. Ivan Barvik, Dr. Delphine Luvino, Dr. Michael Smietana, Dr. Jean-Jacques Vasseur

Journal:

Angewandte Chemie International Edition

Year:

2011

Language:

english

File:

PDF, 297 KB

english, 2011

45

Energetic disorder and exciton states of individual molecular rings

Pavel Heřman, Ivan Barvík, David Zapletal

Journal:

Journal of Luminescence

Year:

2006

Language:

english

File:

PDF, 273 KB

english, 2006

46

The role of calcium in the conformational dynamics and thermal stability of the D-galactose/D-glucose-binding protein from Escherichia coli

Petr Herman, Jaroslav Vecer, Ivan Barvik Jr., Viviana Scognamiglio, Maria Staiano, Marcella de Champdoré, Antonio Varriale, Mose' Rossi, Sabato D'Auria

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 468 KB

english, 2005

47

Solution Structure of Domain 1.1 of the σ A Factor from Bacillus subtilis is Preformed for Binding to the RNA Polymerase Core

Zachrdla, Milan, Padrta, Petr, Rabatinová, Alžbeta, Šanderová, Hana, Barvík, Ivan, Krásný, Libor, Žídek, Lukáš

Journal:

Journal of Biological Chemistry

Year:

2017

Language:

english

File:

PDF, 2.28 MB

english, 2017

48

Lost of coherence due to disorder in molecular rings

Pavel Heřman, David Zapletal, Ivan Barvík

Journal:

physica status solidi (c)

Year:

2009

Language:

english

File:

PDF, 367 KB

english, 2009

49

S4-S5 Linker is Involved in Voltage-Dependent Gating of Human Transient Receptor Potential Ankyrin 1 Channel

Witschas, Katja, Sura, Lucie, Zima, Vlastimil, Hynkova, Anna, Barvik, Ivan, Vlachova, Viktorie

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 54 KB

english, 2013

50

Some remarks about the role of a back recombination in RC primary processes

Ivan Barvik, Ladislav Nedbal

Journal:

Journal of Theoretical Biology

Year:

1992

Language:

english

File:

PDF, 593 KB

english, 1992

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